Quickstart

Import core modules from the package namespace:

from celltraj.trajectory import Trajectory
from celltraj import features, imageprep, model

Run the lightweight CLI smoke command:

celltraj

Most real analyses are currently run from notebooks and scripts that create or load HDF5 trajectory/model files, extract image and mask features, and run trajectory or state-modeling routines. The near-term integration work with sitelab will make those entry points more explicit and better documented.