Installation

For normal development from a local checkout:

cd /path/to/celltraj
python -m pip install -e .

For documentation-only work, install the lightweight docs requirements:

python -m pip install -r docs/requirements.txt

The docs build mocks heavy scientific dependencies so documentation can be generated without installing every analysis backend.

For full trajectory-analysis work, use the project environment files as a starting point and add optional scientific dependencies required by the specific workflow you are running.