celltraj documentation

celltraj is a Python toolkit for single-cell trajectory modeling, live-cell feature analysis, trajectory embedding, and dynamical modeling.

Note

The documentation has been moved to the same source/build/publish pattern used by sitelab. The public docs are generated from this repo but published through CancerDynamics.org.

Getting Started

• Installation
• Quickstart

User Guide

• Overview
• Tutorials

Developer Guide

• Repository Layout
• Publishing
  • Build Locally
  • Copy Into CancerDynamics.org

Reference

• API Reference
  • celltraj.trajectory
  • celltraj.features
  • celltraj.imageprep
  • celltraj.model
  • celltraj.spatial
  • celltraj.translate
  • celltraj.utilities
  • celltraj.cli